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Introduction to Modelling Infectious Diseases in R

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  1. MODULE 1: SIR Model Basics

    Introduction to Compartmental Models for Infectious Disease
  2. Introduction to Ordinary Differential Equations (ODEs) and the SIR Model
  3. Introduction to SIR Modelling in R
  4. MODULE 2: SIR Model Extensions
    Modelling Density-dependent vs. Frequency-dependent Transmission
  5. SIR model with Demographics
  6. CASE STUDY: Modelling with Real-World Data
    SEIR & SEIRW models for Hepatitis E Virus (HEV) Outbreaks: A Case Study
  7. MODULE 3: Epidemic Thresholds
    The Basic Reproduction Number (R0)
  8. The Effective Reproduction Number (Re)
  9. Vaccination and Herd Immunity
  10. Practical Example: Models for Infectious Disease Management & Policy
    Vaccination Strategies to Control Hepatitis E Outbreaks: A Modeling Study (Cooper et al. 2018)

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Introduction to Modelling Infectious Diseases in R Vaccination Strategies to Control Hepatitis E Outbreaks: A Modeling Study (Cooper et al. 2018)
Lesson 10 of 10
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Vaccination Strategies to Control Hepatitis E Outbreaks: A Modeling Study (Cooper et al. 2018)

Lesson Video

RESEARCH ARTICLE: Reactive and pre-emptive vaccination strategies to control hepatitis E infection in emergency and refugee settings: A modelling study

Cooper et al. – 2018 – Reactive and pre-emptive vaccination strategies toDownload

Ten Simple Rules for Reading a Scientific Paper

Carey et al. – 2020 – Ten simple rules for reading a scientific paperDownload

Lesson Slides

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Brent

I’m not sure if support for this course is still live, but this final video seems to be an unedited cut that doesn’t finish applying the ten simple rules to the HEV case study article.

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Joy

Hello! Sorry about this, it does seem like this is the wrong version and we will update it as soon as possible.

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