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MODULE 1: SIR Model Basics
Introduction to Compartmental Models for Infectious Disease -
Introduction to Ordinary Differential Equations (ODEs) and the SIR Model
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Introduction to SIR Modelling in R
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MODULE 2: SIR Model ExtensionsModelling Density-dependent vs. Frequency-dependent Transmission
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SIR model with Demographics
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CASE STUDY: Modelling with Real-World DataSEIR & SEIRW models for Hepatitis E Virus (HEV) Outbreaks: A Case Study
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MODULE 3: Epidemic ThresholdsThe Basic Reproduction Number (R0)
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The Effective Reproduction Number (Re)
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Vaccination and Herd Immunity
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Practical Example: Models for Infectious Disease Management & PolicyVaccination Strategies to Control Hepatitis E Outbreaks: A Modeling Study (Cooper et al. 2018)
Lesson Video
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Lesson Notes
Lesson Slides
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