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Introduction to Modelling Infectious Diseases in R

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  1. MODULE 1: SIR Model Basics

    Introduction to Compartmental Models for Infectious Disease
  2. Introduction to Ordinary Differential Equations (ODEs) and the SIR Model
  3. Introduction to SIR Modelling in R
  4. MODULE 2: SIR Model Extensions
    Modelling Density-dependent vs. Frequency-dependent Transmission
  5. SIR model with Demographics
  6. CASE STUDY: Modelling with Real-World Data
    SEIR & SEIRW models for Hepatitis E Virus (HEV) Outbreaks: A Case Study
  7. MODULE 3: Epidemic Thresholds
    The Basic Reproduction Number (R0)
  8. The Effective Reproduction Number (Re)
  9. Vaccination and Herd Immunity
  10. Practical Example: Models for Infectious Disease Management & Policy
    Vaccination Strategies to Control Hepatitis E Outbreaks: A Modeling Study (Cooper et al. 2018)

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