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R for Busy People (Cohort-0)
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Installing R and RStudio1 Lesson|2 Quizzes
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The RStudio IDE1 Lesson|2 Quizzes
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Coding Basics1 Lesson|2 Quizzes
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Assignment | Workshop 11 Quiz
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Data dive: Ebola in Sierra Leone1 Lesson|2 Quizzes
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RStudio Projects1 Lesson|2 Quizzes
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Workshop 21 Lesson|1 Quiz
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Using R Markdown1 Lesson|2 Quizzes
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Data classes & structures (deprec)2 Lessons
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Workshop 31 Lesson|1 Quiz
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Select & rename1 Lesson|3 Quizzes
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Filter1 Lesson|3 Quizzes
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Workshop 41 Quiz
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Mutate1 Lesson|3 Quizzes
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Workshop 51 Lesson|1 Quiz
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Conditional mutate1 Lesson|3 Quizzes
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Group by and summarize1 Lesson|2 Quizzes
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Workshop 61 Lesson|1 Quiz
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Other grouped operations1 Lesson|2 Quizzes
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Workshop 71 Lesson|1 Quiz
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Intro to ggplot21 Lesson|2 Quizzes
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Scatter plots and smoothing1 Lesson|2 Quizzes
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Workshop 81 Lesson|1 Quiz
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Lines, scales, and labels1 Lesson|2 Quizzes
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Overview of the EpiGraphHub web platform
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Data exploration on EpiGraphHub1 Quiz
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Workshop 91 Lesson|1 Quiz
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Workshop 101 Lesson|1 Quiz
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Final project1 Lesson|1 Quiz
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Getting help1 Lesson|1 Quiz
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Quiz contributions16 Lessons
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Quiz contributions: The RStudio IDE
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Quiz contributions: Coding basics
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Quiz contributions: Data dive | Ebola in Sierra Leone
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Quiz contributions: RStudio Projects
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Quiz contributions: R Markdown
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Quiz contributions: Data classes & structures
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Quiz contributions: Select & rename
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Quiz contributions: Filter
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Quiz contributions: Mutate
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Quiz contributions: Conditional mutate
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Quiz contributions: Group by and summarize
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Quiz contributions: Other grouped operations
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Quiz contributions: Pivoting data
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Quiz contributions: Intro to ggplot2
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Quiz contributions: Scatter plots and smoothing
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Quiz contributions: Lines, scales and labels
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Quiz contributions: The RStudio IDE
Participants 76
Topic 8 of 31
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Using R Markdown
This lesson can be followed by watching the lesson video below, or reading through the lesson manuscript further down. Choose whichever mode works best for you!
Lesson video
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Lesson notes
The written guide below is an accompaniment to the lesson video. You may read through it if you prefer written tutorials to video content.
Topic Content
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Hi instructors, or anyone who can help. I am encountering an error, as you can see in the attached photo. I cannot knit, but all the codes are running well. Please help…
Hi Lameck!
It appears your code is correct but for some reason RStudio is not finding the dataset. I recommend saving your Rmd file and try restarting your R session. Sometimes this can debug small errors.
Hello. I did not use the here function for my code and it still knit. is it beacuse my csv is in the data folder in the rmd?ebola_sierra_leone <- read_csv(“data/ebola_sierra_leone.csv”) Also, this may be intuitive but how to type the backticks in mark because i was not able to do this command succesfully… Read more »
I think the r and the code must all be within the backticks.
Hi Muna!
Although Rmd appeared to knit, we always recommend you to add the
here()
function when importing any dataset. So make sure to include it in your script.As for the inline code, just as Lameck mention, you need to write the inline code INSIDE the tick marks.
How do I obtain |> on the keyboard?
To type the vertical bar on most keyboards, press Shift + \.
Very interesting, however I would like to know if Markdown can help carry out geographic analyzes such as remote sensing or thematic analyses? And if in future training you could include such analyses. THANKS
Hello! Yes R can be used for this. We’ll consider including it in future sessions.
Very interesting, however I would like to know if Markdown can help carry out geographic analyzes such as remote sensing or thematic analyses? And if in future training you could include such analyses. THANKS
Hello! Yes R can be used for this. We’ll consider including it in future sessions.